PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00014.35
Common NameAMTR_s00014p00103240
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 386aa    MW: 42600.2 Da    PI: 8.4624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00014.35genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.83e-062663061055
                                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                              + RR+++ +++  L++l+ +      +K + a++L +A+ YIk Lq
  evm_27.model.AmTr_v1.0_scaffold00014.35 266 KVRREKLGDRITALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 306
                                              67*****************98.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.852256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.70E-6266310No hitNo description
SMARTSM003531.7E-4266311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-12266320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-10269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MMQAMKMFNL NNSALPFEPR DLKPNHEIQI PPNYSESTSM IPKLEFTYCT SSNGNYAHNS  60
DQELPTQVKM KQEISDPMSN YGRLASEPSI FQGIQLDYCK SNNDLEEFNR NLLLKCQILG  120
SSISARDSYQ SPANLAHFPK FSRSGLFPQV LPSVEITSLY PTPSLVNPRC ENLMQALNFS  180
VTAKSGEIFH QTSACYPGSL SEARSCGLEY PQKHLQRPSS IPHKISTFME ETAGACRFGS  240
MGSTTASEAP SKRRRFEASS SFPPFKVRRE KLGDRITALQ QLVAPFGKTD TASVLMEAIG  300
YIKFLQEQVE TLSVPYMKLS GSNANAGRRR SHGDRTKNEG DKDGDGEPKR DLKSRGLCLV  360
PLSCTTLVTS DNGAPLWPPS KFGGP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006847529.20.0PREDICTED: transcription factor bHLH110
TrEMBLW1PPJ00.0W1PPJ0_AMBTC; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13421337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-50bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]